Multiple threading of a triple-calix[6]arene host

A characterization of triple semigroup of ternary functions and Demorgan triple semigroup of ternary functions

Protein Threading Based on Multiple Protein Structure Alignment.

Protein threading, a method employed in protein three-dimensional (3D) structure prediction was only proposed in the early 1990's although predicting protein 3D structure from its given amino acid sequence has been around since 1970's. Here we describe a protein threading method/system that we have developed based on multiple protein structure alignment. In order to compute multiple structure a...

Hierarchical Multi-Threading For Exploiting Parallelism at Multiple Granularities

As we approach billion-transistor processor chips, the need for a new architecture to make eÆcient use of the increased transistor budget arises. Many studies have shown that signi cant amounts of parallelism exist at di erent granularities that is yet to be exploited. Architectures such as superscalar and VLIW use centralized resources, which prohibit scalability and hence the ability to make ...

ThreaDom: extracting protein domain boundary information from multiple threading alignments

MOTIVATION Protein domains are subunits that can fold and evolve independently. Identification of domain boundary locations is often the first step in protein folding and function annotations. Most of the current methods deduce domain boundaries by sequence-based analysis, which has low accuracy. There is no efficient method for predicting discontinuous domains that consist of segments from sep...

Protein Threading

The most important in silico methods, to exploit the amount of new genomic data, are based on the concept of homology. The principle of homology-based analysis is to identify a homology relationship between a new protein and a protein whose function is known. For remote homologs, sequence alignment methods fail. In such a case one aligns the sequence of a new protein with the 3D structures of k...